PhytophthoraV1, Main, Exploration, bibRecord, 000634

Transcription profiling and identification of infection-related genes in Phytophthora cactorum.

Identifieur interne : 000634 ( Main/Exploration ); précédent : 000633; suivant : 000635

Transcription profiling and identification of infection-related genes in Phytophthora cactorum.

Auteurs : Xiao-Ren Chen [République populaire de Chine] ; Shen-Xin Huang [République populaire de Chine] ; Ye Zhang [République populaire de Chine] ; Gui-Lin Sheng [République populaire de Chine] ; Bo-Yue Zhang [République populaire de Chine] ; Qi-Yuan Li [République populaire de Chine] ; Feng Zhu [République populaire de Chine] ; Jing-You Xu [République populaire de Chine]

Source :

Molecular genetics and genomics : MGG [ 1617-4623 ] ; 2018.

RBID : pubmed:29218408

Descripteurs français

KwdFr :
- Analyse de profil d'expression de gènes (méthodes), Gene Ontology (MeSH), Maladies des plantes (microbiologie), Mycelium (génétique), Phytophthora (génétique), Phytophthora (pathogénicité), Phytophthora (physiologie), Similitude de séquences d'acides aminés (MeSH), Spores (génétique), Séquence d'acides aminés (MeSH), Virulence (génétique).
MESH :
- génétique : Mycelium, Phytophthora, Spores, Virulence.
- microbiologie : Maladies des plantes.
- méthodes : Analyse de profil d'expression de gènes.
- pathogénicité : Phytophthora.
- physiologie : Phytophthora.
- Gene Ontology, Similitude de séquences d'acides aminés, Séquence d'acides aminés.

English descriptors

KwdEn :
- Amino Acid Sequence (MeSH), Gene Expression Profiling (methods), Gene Ontology (MeSH), Mycelium (genetics), Phytophthora (genetics), Phytophthora (pathogenicity), Phytophthora (physiology), Plant Diseases (microbiology), Sequence Homology, Amino Acid (MeSH), Spores (genetics), Virulence (genetics).
MESH :
- genetics : Mycelium, Phytophthora, Spores, Virulence.
- methods : Gene Expression Profiling.
- microbiology : Plant Diseases.
- pathogenicity : Phytophthora.
- physiology : Phytophthora.
- Amino Acid Sequence, Gene Ontology, Sequence Homology, Amino Acid.

Abstract

Phytophthora cactorum, an oomycete pathogen, infects more than 200 plant species within several plant families. To gain insight into the repertoire of the infection-related genes of P. cactorum, Illumina RNA-Seq was used to perform a global transcriptome analysis of three life cycle stages of the pathogen, mycelia (MY), zoospores (ZO) and germinating cysts with germ tubes (GC). From over 9.8 million Illumina reads for each library, 18,402, 18,569 and 19,443 distinct genes were identified for MY, ZO and GC libraries, respectively. Furthermore, the transcriptome difference among MY, ZO and GC stages was investigated. Gene ontology (GO) and KEGG pathway enrichment analyses revealed diverse biological functions and processes. Comparative analysis identified a large number of genes that are associated with specific stages and pathogenicity, including 166 effector genes. Of them, most of RXLR and NLP genes showed induction while the majority of CRN genes were down-regulated in GC, the important pre-infection stage, compared to either MY or ZO. And 14 genes encoding small cysteine-rich (SCR) secretory proteins showed differential expression during the developmental stages and in planta. Ectopic expression in the Solanaceae indicated that SCR113 and one elicitin PcINF1 can trigger cell death on Nicotiana benthamiana, tobacco (N. tabacum) and tomato (Solanum lycopersicum) leaves. Neither conserved domain nor homologues of SCR113 in other organisms can be identified. Collectively, our study provides a comprehensive examination of gene expression across three P. cactorum developmental stages and describes pathogenicity-related genes, all of which will help elucidate the pathogenicity mechanism of this destructive pathogen.

DOI: 10.1007/s00438-017-1400-7
PubMed: 29218408

Affiliations:

République populaire de Chine

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 000872
to stream Main, to step Curation: 000872

Le document en format XML

<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Transcription profiling and identification of infection-related genes in Phytophthora cactorum.</title>
<author><name sortKey="Chen, Xiao Ren" sort="Chen, Xiao Ren" uniqKey="Chen X" first="Xiao-Ren" last="Chen">Xiao-Ren Chen</name>
<affiliation wicri:level="1"><nlm:affiliation>College of Horticulture and Plant Protection, Yangzhou University, 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu, China. xrchen@yzu.edu.cn.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>College of Horticulture and Plant Protection, Yangzhou University, 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu</wicri:regionArea>
<wicri:noRegion>Jiangsu</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Huang, Shen Xin" sort="Huang, Shen Xin" uniqKey="Huang S" first="Shen-Xin" last="Huang">Shen-Xin Huang</name>
<affiliation wicri:level="1"><nlm:affiliation>College of Horticulture and Plant Protection, Yangzhou University, 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>College of Horticulture and Plant Protection, Yangzhou University, 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu</wicri:regionArea>
<wicri:noRegion>Jiangsu</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Zhang, Ye" sort="Zhang, Ye" uniqKey="Zhang Y" first="Ye" last="Zhang">Ye Zhang</name>
<affiliation wicri:level="1"><nlm:affiliation>College of Horticulture and Plant Protection, Yangzhou University, 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>College of Horticulture and Plant Protection, Yangzhou University, 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu</wicri:regionArea>
<wicri:noRegion>Jiangsu</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Sheng, Gui Lin" sort="Sheng, Gui Lin" uniqKey="Sheng G" first="Gui-Lin" last="Sheng">Gui-Lin Sheng</name>
<affiliation wicri:level="1"><nlm:affiliation>College of Horticulture and Plant Protection, Yangzhou University, 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>College of Horticulture and Plant Protection, Yangzhou University, 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu</wicri:regionArea>
<wicri:noRegion>Jiangsu</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Zhang, Bo Yue" sort="Zhang, Bo Yue" uniqKey="Zhang B" first="Bo-Yue" last="Zhang">Bo-Yue Zhang</name>
<affiliation wicri:level="1"><nlm:affiliation>College of Horticulture and Plant Protection, Yangzhou University, 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>College of Horticulture and Plant Protection, Yangzhou University, 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu</wicri:regionArea>
<wicri:noRegion>Jiangsu</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Li, Qi Yuan" sort="Li, Qi Yuan" uniqKey="Li Q" first="Qi-Yuan" last="Li">Qi-Yuan Li</name>
<affiliation wicri:level="1"><nlm:affiliation>College of Horticulture and Plant Protection, Yangzhou University, 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>College of Horticulture and Plant Protection, Yangzhou University, 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu</wicri:regionArea>
<wicri:noRegion>Jiangsu</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Zhu, Feng" sort="Zhu, Feng" uniqKey="Zhu F" first="Feng" last="Zhu">Feng Zhu</name>
<affiliation wicri:level="1"><nlm:affiliation>College of Horticulture and Plant Protection, Yangzhou University, 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>College of Horticulture and Plant Protection, Yangzhou University, 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu</wicri:regionArea>
<wicri:noRegion>Jiangsu</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Xu, Jing You" sort="Xu, Jing You" uniqKey="Xu J" first="Jing-You" last="Xu">Jing-You Xu</name>
<affiliation wicri:level="1"><nlm:affiliation>College of Horticulture and Plant Protection, Yangzhou University, 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>College of Horticulture and Plant Protection, Yangzhou University, 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu</wicri:regionArea>
<wicri:noRegion>Jiangsu</wicri:noRegion>
</affiliation>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PubMed</idno>
<date when="2018">2018</date>
<idno type="RBID">pubmed:29218408</idno>
<idno type="pmid">29218408</idno>
<idno type="doi">10.1007/s00438-017-1400-7</idno>
<idno type="wicri:Area/Main/Corpus">000872</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000872</idno>
<idno type="wicri:Area/Main/Curation">000872</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000872</idno>
<idno type="wicri:Area/Main/Exploration">000872</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en">Transcription profiling and identification of infection-related genes in Phytophthora cactorum.</title>
<author><name sortKey="Chen, Xiao Ren" sort="Chen, Xiao Ren" uniqKey="Chen X" first="Xiao-Ren" last="Chen">Xiao-Ren Chen</name>
<affiliation wicri:level="1"><nlm:affiliation>College of Horticulture and Plant Protection, Yangzhou University, 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu, China. xrchen@yzu.edu.cn.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>College of Horticulture and Plant Protection, Yangzhou University, 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu</wicri:regionArea>
<wicri:noRegion>Jiangsu</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Huang, Shen Xin" sort="Huang, Shen Xin" uniqKey="Huang S" first="Shen-Xin" last="Huang">Shen-Xin Huang</name>
<affiliation wicri:level="1"><nlm:affiliation>College of Horticulture and Plant Protection, Yangzhou University, 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>College of Horticulture and Plant Protection, Yangzhou University, 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu</wicri:regionArea>
<wicri:noRegion>Jiangsu</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Zhang, Ye" sort="Zhang, Ye" uniqKey="Zhang Y" first="Ye" last="Zhang">Ye Zhang</name>
<affiliation wicri:level="1"><nlm:affiliation>College of Horticulture and Plant Protection, Yangzhou University, 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>College of Horticulture and Plant Protection, Yangzhou University, 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu</wicri:regionArea>
<wicri:noRegion>Jiangsu</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Sheng, Gui Lin" sort="Sheng, Gui Lin" uniqKey="Sheng G" first="Gui-Lin" last="Sheng">Gui-Lin Sheng</name>
<affiliation wicri:level="1"><nlm:affiliation>College of Horticulture and Plant Protection, Yangzhou University, 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>College of Horticulture and Plant Protection, Yangzhou University, 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu</wicri:regionArea>
<wicri:noRegion>Jiangsu</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Zhang, Bo Yue" sort="Zhang, Bo Yue" uniqKey="Zhang B" first="Bo-Yue" last="Zhang">Bo-Yue Zhang</name>
<affiliation wicri:level="1"><nlm:affiliation>College of Horticulture and Plant Protection, Yangzhou University, 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>College of Horticulture and Plant Protection, Yangzhou University, 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu</wicri:regionArea>
<wicri:noRegion>Jiangsu</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Li, Qi Yuan" sort="Li, Qi Yuan" uniqKey="Li Q" first="Qi-Yuan" last="Li">Qi-Yuan Li</name>
<affiliation wicri:level="1"><nlm:affiliation>College of Horticulture and Plant Protection, Yangzhou University, 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>College of Horticulture and Plant Protection, Yangzhou University, 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu</wicri:regionArea>
<wicri:noRegion>Jiangsu</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Zhu, Feng" sort="Zhu, Feng" uniqKey="Zhu F" first="Feng" last="Zhu">Feng Zhu</name>
<affiliation wicri:level="1"><nlm:affiliation>College of Horticulture and Plant Protection, Yangzhou University, 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>College of Horticulture and Plant Protection, Yangzhou University, 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu</wicri:regionArea>
<wicri:noRegion>Jiangsu</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Xu, Jing You" sort="Xu, Jing You" uniqKey="Xu J" first="Jing-You" last="Xu">Jing-You Xu</name>
<affiliation wicri:level="1"><nlm:affiliation>College of Horticulture and Plant Protection, Yangzhou University, 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>College of Horticulture and Plant Protection, Yangzhou University, 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu</wicri:regionArea>
<wicri:noRegion>Jiangsu</wicri:noRegion>
</affiliation>
</author>
</analytic>
<series><title level="j">Molecular genetics and genomics : MGG</title>
<idno type="eISSN">1617-4623</idno>
<imprint><date when="2018" type="published">2018</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Amino Acid Sequence (MeSH)</term>
<term>Gene Expression Profiling (methods)</term>
<term>Gene Ontology (MeSH)</term>
<term>Mycelium (genetics)</term>
<term>Phytophthora (genetics)</term>
<term>Phytophthora (pathogenicity)</term>
<term>Phytophthora (physiology)</term>
<term>Plant Diseases (microbiology)</term>
<term>Sequence Homology, Amino Acid (MeSH)</term>
<term>Spores (genetics)</term>
<term>Virulence (genetics)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de profil d'expression de gènes (méthodes)</term>
<term>Gene Ontology (MeSH)</term>
<term>Maladies des plantes (microbiologie)</term>
<term>Mycelium (génétique)</term>
<term>Phytophthora (génétique)</term>
<term>Phytophthora (pathogénicité)</term>
<term>Phytophthora (physiologie)</term>
<term>Similitude de séquences d'acides aminés (MeSH)</term>
<term>Spores (génétique)</term>
<term>Séquence d'acides aminés (MeSH)</term>
<term>Virulence (génétique)</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Mycelium</term>
<term>Phytophthora</term>
<term>Spores</term>
<term>Virulence</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Mycelium</term>
<term>Phytophthora</term>
<term>Spores</term>
<term>Virulence</term>
</keywords>
<keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Gene Expression Profiling</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Maladies des plantes</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Diseases</term>
</keywords>
<keywords scheme="MESH" qualifier="méthodes" xml:lang="fr"><term>Analyse de profil d'expression de gènes</term>
</keywords>
<keywords scheme="MESH" qualifier="pathogenicity" xml:lang="en"><term>Phytophthora</term>
</keywords>
<keywords scheme="MESH" qualifier="pathogénicité" xml:lang="fr"><term>Phytophthora</term>
</keywords>
<keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Phytophthora</term>
</keywords>
<keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Phytophthora</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term>
<term>Gene Ontology</term>
<term>Sequence Homology, Amino Acid</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Gene Ontology</term>
<term>Similitude de séquences d'acides aminés</term>
<term>Séquence d'acides aminés</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">Phytophthora cactorum, an oomycete pathogen, infects more than 200 plant species within several plant families. To gain insight into the repertoire of the infection-related genes of P. cactorum, Illumina RNA-Seq was used to perform a global transcriptome analysis of three life cycle stages of the pathogen, mycelia (MY), zoospores (ZO) and germinating cysts with germ tubes (GC). From over 9.8 million Illumina reads for each library, 18,402, 18,569 and 19,443 distinct genes were identified for MY, ZO and GC libraries, respectively. Furthermore, the transcriptome difference among MY, ZO and GC stages was investigated. Gene ontology (GO) and KEGG pathway enrichment analyses revealed diverse biological functions and processes. Comparative analysis identified a large number of genes that are associated with specific stages and pathogenicity, including 166 effector genes. Of them, most of RXLR and NLP genes showed induction while the majority of CRN genes were down-regulated in GC, the important pre-infection stage, compared to either MY or ZO. And 14 genes encoding small cysteine-rich (SCR) secretory proteins showed differential expression during the developmental stages and in planta. Ectopic expression in the Solanaceae indicated that SCR113 and one elicitin PcINF1 can trigger cell death on Nicotiana benthamiana, tobacco (N. tabacum) and tomato (Solanum lycopersicum) leaves. Neither conserved domain nor homologues of SCR113 in other organisms can be identified. Collectively, our study provides a comprehensive examination of gene expression across three P. cactorum developmental stages and describes pathogenicity-related genes, all of which will help elucidate the pathogenicity mechanism of this destructive pathogen.</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">29218408</PMID>
<DateCompleted><Year>2018</Year>
<Month>03</Month>
<Day>26</Day>
</DateCompleted>
<DateRevised><Year>2018</Year>
<Month>11</Month>
<Day>13</Day>
</DateRevised>
<Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1617-4623</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>293</Volume>
<Issue>2</Issue>
<PubDate><Year>2018</Year>
<Month>Apr</Month>
</PubDate>
</JournalIssue>
<Title>Molecular genetics and genomics : MGG</Title>
<ISOAbbreviation>Mol Genet Genomics</ISOAbbreviation>
</Journal>
<ArticleTitle>Transcription profiling and identification of infection-related genes in Phytophthora cactorum.</ArticleTitle>
<Pagination><MedlinePgn>541-555</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1007/s00438-017-1400-7</ELocationID>
<Abstract><AbstractText>Phytophthora cactorum, an oomycete pathogen, infects more than 200 plant species within several plant families. To gain insight into the repertoire of the infection-related genes of P. cactorum, Illumina RNA-Seq was used to perform a global transcriptome analysis of three life cycle stages of the pathogen, mycelia (MY), zoospores (ZO) and germinating cysts with germ tubes (GC). From over 9.8 million Illumina reads for each library, 18,402, 18,569 and 19,443 distinct genes were identified for MY, ZO and GC libraries, respectively. Furthermore, the transcriptome difference among MY, ZO and GC stages was investigated. Gene ontology (GO) and KEGG pathway enrichment analyses revealed diverse biological functions and processes. Comparative analysis identified a large number of genes that are associated with specific stages and pathogenicity, including 166 effector genes. Of them, most of RXLR and NLP genes showed induction while the majority of CRN genes were down-regulated in GC, the important pre-infection stage, compared to either MY or ZO. And 14 genes encoding small cysteine-rich (SCR) secretory proteins showed differential expression during the developmental stages and in planta. Ectopic expression in the Solanaceae indicated that SCR113 and one elicitin PcINF1 can trigger cell death on Nicotiana benthamiana, tobacco (N. tabacum) and tomato (Solanum lycopersicum) leaves. Neither conserved domain nor homologues of SCR113 in other organisms can be identified. Collectively, our study provides a comprehensive examination of gene expression across three P. cactorum developmental stages and describes pathogenicity-related genes, all of which will help elucidate the pathogenicity mechanism of this destructive pathogen.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Chen</LastName>
<ForeName>Xiao-Ren</ForeName>
<Initials>XR</Initials>
<Identifier Source="ORCID">http://orcid.org/0000-0003-2395-0562</Identifier>
<AffiliationInfo><Affiliation>College of Horticulture and Plant Protection, Yangzhou University, 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu, China. xrchen@yzu.edu.cn.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Huang</LastName>
<ForeName>Shen-Xin</ForeName>
<Initials>SX</Initials>
<AffiliationInfo><Affiliation>College of Horticulture and Plant Protection, Yangzhou University, 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Zhang</LastName>
<ForeName>Ye</ForeName>
<Initials>Y</Initials>
<AffiliationInfo><Affiliation>College of Horticulture and Plant Protection, Yangzhou University, 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Sheng</LastName>
<ForeName>Gui-Lin</ForeName>
<Initials>GL</Initials>
<AffiliationInfo><Affiliation>College of Horticulture and Plant Protection, Yangzhou University, 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Zhang</LastName>
<ForeName>Bo-Yue</ForeName>
<Initials>BY</Initials>
<AffiliationInfo><Affiliation>College of Horticulture and Plant Protection, Yangzhou University, 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Li</LastName>
<ForeName>Qi-Yuan</ForeName>
<Initials>QY</Initials>
<AffiliationInfo><Affiliation>College of Horticulture and Plant Protection, Yangzhou University, 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Zhu</LastName>
<ForeName>Feng</ForeName>
<Initials>F</Initials>
<AffiliationInfo><Affiliation>College of Horticulture and Plant Protection, Yangzhou University, 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Xu</LastName>
<ForeName>Jing-You</ForeName>
<Initials>JY</Initials>
<AffiliationInfo><Affiliation>College of Horticulture and Plant Protection, Yangzhou University, 48 Wenhui Eastern Road, Yangzhou, 225009, Jiangsu, China.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<GrantList CompleteYN="Y"><Grant><GrantID>31671971</GrantID>
<Agency>National Natural Science Foundation of China</Agency>
<Country></Country>
</Grant>
<Grant><GrantID>31500209</GrantID>
<Agency>National Natural Science Foundation of China</Agency>
<Country></Country>
</Grant>
<Grant><GrantID>YZ2016121</GrantID>
<Agency>Natural Science Foundation of Yangzhou City (China)</Agency>
<Country></Country>
</Grant>
<Grant><GrantID>YZ2015106</GrantID>
<Agency>Natural Science Foundation of Yangzhou City (China)</Agency>
<Country></Country>
</Grant>
<Grant><GrantID>201303018</GrantID>
<Agency>the Special Fund for Agro-Scientific Research in the Public Interest of China</Agency>
<Country></Country>
</Grant>
<Grant><GrantID>15KJB210007</GrantID>
<Agency>Natural Science Foundation of the Higher Education Institutions of Jiangsu Province of China</Agency>
<Country></Country>
</Grant>
</GrantList>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2017</Year>
<Month>12</Month>
<Day>07</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>Germany</Country>
<MedlineTA>Mol Genet Genomics</MedlineTA>
<NlmUniqueID>101093320</NlmUniqueID>
<ISSNLinking>1617-4623</ISSNLinking>
</MedlineJournalInfo>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D000595" MajorTopicYN="N">Amino Acid Sequence</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D020869" MajorTopicYN="N">Gene Expression Profiling</DescriptorName>
<QualifierName UI="Q000379" MajorTopicYN="Y">methods</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D063990" MajorTopicYN="N">Gene Ontology</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D025282" MajorTopicYN="N">Mycelium</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010838" MajorTopicYN="N">Phytophthora</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
<QualifierName UI="Q000472" MajorTopicYN="N">pathogenicity</QualifierName>
<QualifierName UI="Q000502" MajorTopicYN="N">physiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017386" MajorTopicYN="N">Sequence Homology, Amino Acid</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D013170" MajorTopicYN="N">Spores</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D014774" MajorTopicYN="N">Virulence</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
</MeshHeadingList>
<KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Cell death</Keyword>
<Keyword MajorTopicYN="N">Phytophthora cactorum</Keyword>
<Keyword MajorTopicYN="N">RNA-Seq</Keyword>
<Keyword MajorTopicYN="N">Small cysteine-rich protein</Keyword>
<Keyword MajorTopicYN="N">Transcriptome</Keyword>
<Keyword MajorTopicYN="N">Transient expression</Keyword>
</KeywordList>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="received"><Year>2017</Year>
<Month>06</Month>
<Day>28</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="accepted"><Year>2017</Year>
<Month>11</Month>
<Day>23</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed"><Year>2017</Year>
<Month>12</Month>
<Day>9</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline"><Year>2018</Year>
<Month>3</Month>
<Day>27</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez"><Year>2017</Year>
<Month>12</Month>
<Day>9</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList><ArticleId IdType="pubmed">29218408</ArticleId>
<ArticleId IdType="doi">10.1007/s00438-017-1400-7</ArticleId>
<ArticleId IdType="pii">10.1007/s00438-017-1400-7</ArticleId>
</ArticleIdList>
<ReferenceList><Reference><Citation>Genom Data. 2017 May 12;12 :155-156</Citation>
<ArticleIdList><ArticleId IdType="pubmed">28560165</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Cell. 2009 Sep;21(9):2928-47</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19794118</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Commun Agric Appl Biol Sci. 2007;72(4):891-900</Citation>
<ArticleIdList><ArticleId IdType="pubmed">18396826</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>BMC Plant Biol. 2010 Oct 28;10:234</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21029438</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Science. 2006 Sep 1;313(5791):1261-6</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16946064</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genome Res. 2002 Apr;12(4):656-64</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11932250</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Ginseng Res. 2015 Jul;39(3):213-20</Citation>
<ArticleIdList><ArticleId IdType="pubmed">26199552</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nature. 2009 Sep 17;461(7262):393-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19741609</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Biotechnol Lett. 2011 Apr;33(4):715-20</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21107649</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Cell Proteomics. 2008 Aug;7(8):1501-16</Citation>
<ArticleIdList><ArticleId IdType="pubmed">18316789</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Plant Microbe Interact. 2009 Oct;22(10):1191-202</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19737093</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Phytopathology. 2012 Apr;102(4):348-64</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22185336</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>BMC Genomics. 2014 Nov 18;15:980</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25406848</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nat Methods. 2008 Jul;5(7):621-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">18516045</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>PLoS One. 2013 Sep 03;8(9):e74588</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24019970</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Cell Mol Life Sci. 2003 Jul;60(7):1470-6</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12943233</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>PLoS One. 2011;6(6):e21220</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21731678</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>BMC Genomics. 2010 Nov 16;11:637</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21080964</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Curr Opin Microbiol. 2012 Dec;15(6):685-91</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23177095</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Biol Evol. 2005 Mar;22(3):659-72</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15548752</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Plant Pathol. 2009 Nov;10(6):795-803</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19849785</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Curr Opin Plant Biol. 2010 Aug;13(4):427-33</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20447858</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Bioinformatics. 2007 Nov 1;23(21):2843-50</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17942446</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genome Res. 2003 Jul;13(7):1675-85</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12840044</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Phytochemistry. 1993 Nov;34(5):1261-4</Citation>
<ArticleIdList><ArticleId IdType="pubmed">7764283</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Plant Pathol. 2016 May;17 (4):577-87</Citation>
<ArticleIdList><ArticleId IdType="pubmed">26307454</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Genet Genomics. 2016 Oct;291(5):1967-78</Citation>
<ArticleIdList><ArticleId IdType="pubmed">27447867</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Biol Chem. 2001 Jun 15;276(24):21578-84</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11262411</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Plant Pathol. 2015 May;16(4):413-34</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25178392</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Plant Pathol. 2004 Jul 1;5(4):317-30</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20565599</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Plant Microbe Interact. 2011 Dec;24(12):1530-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21848399</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Microbiol Mol Biol Rev. 2017 Mar 29;81(2):</Citation>
<ArticleIdList><ArticleId IdType="pubmed">28356329</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Science. 2017 Feb 17;355(6326):710-714</Citation>
<ArticleIdList><ArticleId IdType="pubmed">28082413</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Protein Sci. 2011 Dec;20(12):2047-59</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21936011</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Cell Microbiol. 2007 Jan;9(1):31-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17081190</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nucleic Acids Res. 2013 Jul;41(Web Server issue):W349-57</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23748958</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Plant Microbe Interact. 2007 Jul;20(7):781-93</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17601166</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Annu Rev Phytopathol. 2006;44:41-60</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16448329</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Physiol Genomics. 2003 Jan 15;12(2):159-62</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12429865</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Gastroenterology. 2008 Nov;135(5):1466-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">18848555</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Protein Sci. 2009 Aug;18(8):1786-91</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19554629</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>BMC Genomics. 2017 Feb 23;18(1):198</Citation>
<ArticleIdList><ArticleId IdType="pubmed">28228125</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Cell. 2011 Jun;23(6):2064-86</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21653195</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Cell. 1999 Dec;11(12):2291-301</Citation>
<ArticleIdList><ArticleId IdType="pubmed">10590159</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>FEMS Microbiol Ecol. 2009 May;68(2):212-22</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19573202</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genome Biol. 2010;11(7):R73</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20626842</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Curr Opin Plant Biol. 2011 Aug;14(4):407-14</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21641854</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Curr Genet. 2011 Oct;57(5):297-315</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21698431</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Plant Microbe Interact. 2008 Apr;21(4):433-47</Citation>
<ArticleIdList><ArticleId IdType="pubmed">18321189</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
</PubmedData>
</pubmed>
<affiliations><list><country><li>République populaire de Chine</li>
</country>
</list>
<tree><country name="République populaire de Chine"><noRegion><name sortKey="Chen, Xiao Ren" sort="Chen, Xiao Ren" uniqKey="Chen X" first="Xiao-Ren" last="Chen">Xiao-Ren Chen</name>
</noRegion>
<name sortKey="Huang, Shen Xin" sort="Huang, Shen Xin" uniqKey="Huang S" first="Shen-Xin" last="Huang">Shen-Xin Huang</name>
<name sortKey="Li, Qi Yuan" sort="Li, Qi Yuan" uniqKey="Li Q" first="Qi-Yuan" last="Li">Qi-Yuan Li</name>
<name sortKey="Sheng, Gui Lin" sort="Sheng, Gui Lin" uniqKey="Sheng G" first="Gui-Lin" last="Sheng">Gui-Lin Sheng</name>
<name sortKey="Xu, Jing You" sort="Xu, Jing You" uniqKey="Xu J" first="Jing-You" last="Xu">Jing-You Xu</name>
<name sortKey="Zhang, Bo Yue" sort="Zhang, Bo Yue" uniqKey="Zhang B" first="Bo-Yue" last="Zhang">Bo-Yue Zhang</name>
<name sortKey="Zhang, Ye" sort="Zhang, Ye" uniqKey="Zhang Y" first="Ye" last="Zhang">Ye Zhang</name>
<name sortKey="Zhu, Feng" sort="Zhu, Feng" uniqKey="Zhu F" first="Feng" last="Zhu">Feng Zhu</name>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Bois/explor/PhytophthoraV1/Data/Main/Exploration

HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000634 | SxmlIndent | more

HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000634 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Bois
   |area=    PhytophthoraV1
   |flux=    Main
   |étape=   Exploration
   |type=    RBID
   |clé=     pubmed:29218408
   |texte=   Transcription profiling and identification of infection-related genes in Phytophthora cactorum.
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i   -Sk "pubmed:29218408" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd   \
       | NlmPubMed2Wicri -a PhytophthoraV1

This area was generated with Dilib version V0.6.38.
Data generation: Fri Nov 20 11:20:57 2020. Site generation: Wed Mar 6 16:48:20 2024

	Serveur d'exploration Phytophthora
	Attention, ce site est en cours de développement ! Attention, site généré par des moyens informatiques à partir de corpus bruts. Les informations ne sont donc pas validées.

Serveur d'exploration Phytophthora

Transcription profiling and identification of infection-related genes in Phytophthora cactorum.

Transcription profiling and identification of infection-related genes in Phytophthora cactorum.

Source :

Descripteurs français

English descriptors

Abstract

Links toward previous steps (curation, corpus...)

Le document en format XML

Pour manipuler ce document sous Unix (Dilib)

Pour mettre un lien sur cette page dans le réseau Wicri

Pour générer des pages wiki